私は MPI と PETSc の初心者です。システムに PETSc と MPICH2 をインストールし、最も単純な Hello World を実行しようとしました。しかし、意図した出力の代わりに、意味のないものがたくさん出てきます。
私のメイクファイルは次のとおりです。
ALL:exam_petsc1
CFLAGS =
FFLAGS =
CPPFLAGS =
FPPFLAGS =
CLEANFILES = exam_petsc1
include ${PETSC_DIR}/conf/variables
include ${PETSC_DIR}/conf/rules
exam_petsc1: exam_petsc1.o chkopts
${CLINKER} -o exam_petsc1 exam_petsc1.o ${PETSC_LIB}
${RM} exam_petsc1.o
私のプログラムは次のとおりです。
#include <petscksp.h>
int main(int argc, char *argv[])
{
PetscInitialize(&argc,&argv,PETSC_NULL,PETSC_NULL);
PetscPrintf(PETSC_COMM_WORLD,"Hi\n");
PetscFinalize();
return 0;
}
ターミナルの「make」は与えませんが、次の
/usr/bin/mpicc -o exam_petsc1.o -c -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 -I/home/soumyadipta/PETSC/petsc-3.3-p1/include -I/home/soumyadipta/PETSC/petsc-3.3-p1/arch-linux2-c-debug/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -D__INSDIR__= exam_petsc1.cpp
/usr/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -fno-inline -O0 -o exam_petsc1 exam_petsc1.o -Wl,-rpath,/home/soumyadipta/PETSC/petsc-3.3-p1/arch-linux2-c-debug/lib -L/home/soumyadipta/PETSC/petsc-3.3-p1/arch-linux2-c-debug/lib -lpetsc -lpthread -llapack -lblas -Wl,-rpath,/usr/lib/openmpi/lib -L/usr/lib/openmpi/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.6.1 -L/usr/lib/gcc/x86_64-linux-gnu/4.6.1 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lmpi_f90 -lmpi_f77 -lgfortran -lm -lgfortran -lm -lgfortran -lm -lm -lquadmath -lm -ldl -lmpi -lopen-rte -lopen-pal -lnsl -lutil -lgcc_s -lpthread -ldl
/bin/rm -f exam_petsc1.o
「mpiexec -np 4 Exam_petsc1」は、次のようなエラーの長いリストを提供します....
[SoumyadiptaS:13130] *** Process received signal ***
[SoumyadiptaS:13130] Signal: Segmentation fault (11)
[SoumyadiptaS:13130] Signal code: Address not mapped (1)
[SoumyadiptaS:13130] Failing at address: 0x44000098
[SoumyadiptaS:13128] *** Process received signal ***
[SoumyadiptaS:13128] Signal: Segmentation fault (11)
[SoumyadiptaS:13128] Signal code: Address not mapped (1)
[SoumyadiptaS:13128] Failing at address: 0x44000098
[SoumyadiptaS:13130] [ 0] /lib/x86_64-linux-gnu/libpthread.so.0(+0x10060) [0x7f50398e9060]
[SoumyadiptaS:13130] [ 1] /usr/lib/libmpi.so.0(PMPI_Comm_set_errhandler+0x60) [0x7f50391efc80]
[SoumyadiptaS:13130] [ 2] exam_petsc1(PetscInitialize+0x515) [0x41cec9]
[SoumyadiptaS:13130] [ 3] exam_petsc1(main+0x29) [0x40d89d]
[SoumyadiptaS:13130] [ 4] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xed) [0x7f5038e2030d]
[SoumyadiptaS:13130] [ 5] exam_petsc1() [0x40d7b9]
[SoumyadiptaS:13130] *** End of error message ***
[SoumyadiptaS:13129] *** Process received signal ***
[SoumyadiptaS:13129] Signal: Segmentation fault (11)
[SoumyadiptaS:13129] Signal code: Address not mapped (1)
[SoumyadiptaS:13129] Failing at address: 0x44000098
[SoumyadiptaS:13128] [ 0] /lib/x86_64-linux-gnu/libpthread.so.0(+0x10060) [0x7f5e8c830060]
[SoumyadiptaS:13128] [ 1] /usr/lib/libmpi.so.0(PMPI_Comm_set_errhandler+0x60) [0x7f5e8c136c80]
[SoumyadiptaS:13128] [ 2] exam_petsc1(PetscInitialize+0x515) [0x41cec9]
[SoumyadiptaS:13128] [ 3] exam_petsc1(main+0x29) [0x40d89d]
[SoumyadiptaS:13128] [ 4] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xed) [0x7f5e8bd6730d]
[SoumyadiptaS:13128] [ 5] exam_petsc1() [0x40d7b9]
[SoumyadiptaS:13128] *** End of error message ***
[SoumyadiptaS:13131] *** Process received signal ***
[SoumyadiptaS:13131] Signal: Segmentation fault (11)
[SoumyadiptaS:13131] Signal code: Address not mapped (1)
[SoumyadiptaS:13131] Failing at address: 0x44000098
[SoumyadiptaS:13131] [ 0] /lib/x86_64-linux-gnu/libpthread.so.0(+0x10060) [0x7f9e7c261060]
[SoumyadiptaS:13131] [ 1] /usr/lib/libmpi.so.0(PMPI_Comm_set_errhandler+0x60) [0x7f9e7bb67c80]
[SoumyadiptaS:13131] [ 2] exam_petsc1(PetscInitialize+0x515) [0x41cec9]
[SoumyadiptaS:13131] [ 3] exam_petsc1(main+0x29) [0x40d89d]
[SoumyadiptaS:13131] [ 4] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xed) [0x7f9e7b79830d]
[SoumyadiptaS:13131] [ 5] exam_petsc1() [0x40d7b9]
[SoumyadiptaS:13131] *** End of error message ***
--------------------------------------------------------------------------
mpiexec noticed that process rank 2 with PID 13130 on node SoumyadiptaS exited on signal 11 (Segmentation fault).
--------------------------------------------------------------------------
[SoumyadiptaS:13129] [ 0] /lib/x86_64-linux-gnu/libpthread.so.0(+0x10060) [0x7f73a8ac2060]
[SoumyadiptaS:13129] [ 1] /usr/lib/libmpi.so.0(PMPI_Comm_set_errhandler+0x60) [0x7f73a83c8c80]
[SoumyadiptaS:13129] [ 2] exam_petsc1(PetscInitialize+0x515) [0x41cec9]
[SoumyadiptaS:13129] [ 3] exam_petsc1(main+0x29) [0x40d89d]
[SoumyadiptaS:13129] [ 4] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xed) [0x7f73a7ff930d]
[SoumyadiptaS:13129] [ 5] exam_petsc1() [0x40d7b9]
[SoumyadiptaS:13129] *** End of error message ***
私のプログラムのどこが悪いのですか???