You're in the wrong path
When you do this:
$ cd /MyProject/app/Console
$ ./cake bake
You're launching the cake cli from inside the Console
folder. That's not the right/normal way to execute the cake cli.
As is evident from the output, the cli thinks that you want to bake a new project in the Console
folder because the path you are in, is not itself already a project. This changed some months ago, but in the version of cake you're using, the directory you are in, is assumed to be your app folder.
That said, ordinarily cake is used like this:
$ cd /MyProject/app
$ Console/cake bake
Welcome to CakePHP v2.3.6 Console
---------------------------------------------------------------
App : app
Path /var/www/project/app/
---------------------------------------------------------------
Interactive Bake Shell
---------------------------------------------------------------
[D]atabase Configuration
[M]odel
[V]iew
[C]ontroller
[P]roject
[F]ixture
[T]est case
[Q]uit
What would you like to Bake? (D/M/V/C/P/F/T/Q)
When already in an app folder - the bake command asks you what you want to create.