I'm having a little bit of trouble conceptualizing the workflow used in a shader-based OpenGL program. While I've never really done any major projects using either the fixed-function or shader-based pipelines, I've started learning and experimenting, and it's become quite clear to me that shaders are the way to go.
However, the fixed-function pipeline makes much more sense to me from an intuitive perspective. Rendering a scene with that method is simple and procedural—like painting a picture. If I want to draw a box, I tell the graphics card to draw a box. If I want a lot of boxes, I draw my box in a loop. The fixed-function pipeline fits well with my established programming tendencies.
These all seem to go out the window with shaders, and this is where I'm hitting a block. A lot of shader-based tutorials show how to, for example, draw a triangle or a cube on the screen, which works fine. However, they don't seem to go into at all how I would apply these concepts in, for example, a game. If I wanted to draw three procedurally generated triangles, would I need three shaders? Obviously not, since that would be infeasible. Still, it's clearly not as simple as just sticking the drawing code in a loop that runs three times.
Therefore, I'm wondering what the "best practices" are for using shaders in game development environments. How many shaders should I have for a simple game? How do I switch between them and use them to render a real scene?
I'm not looking for specifics, just a general understanding. For example, if I had a shader that rendered a circle, how would I reuse that shader to draw different sized circles at different points on the screen? If I want each circle to be a different color, how can I pass some information to the fragment shader for each individual circle?