Ubuntu 20.04 に R 4.0.0 をロードした後。
R version 4.0.0 (2020-04-24) -- "Arbor Day"
Copyright (C) 2020 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
Natural language support but running in an English locale
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Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
そして、次のパッケージをロードします。
> sessionInfo()
R version 4.0.0 (2020-04-24)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 20.04 LTS
Matrix products: default
BLAS: /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3
LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/liblapack.so.3
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
loaded via a namespace (and not attached):
[1] compiler_4.0.0
パッケージをインストールしようとするmclustと、遅延読み込みの準備中に R がスタックします。
> install.packages('mclust')
Installing package into ‘/home/marc/R/x86_64-pc-linux-gnu-library/4.0’
(as ‘lib’ is unspecified)
trying URL 'https://cloud.r-project.org/src/contrib/mclust_5.4.6.tar.gz'
Content type 'application/x-gzip' length 2877519 bytes (2.7 MB)
==================================================
downloaded 2.7 MB
* installing *source* package ‘mclust’ ...
** package ‘mclust’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
gfortran -fno-optimize-sibling-calls -fpic -g -O2 -fdebug-prefix-map=/build/r-base-Do_dS_/r-base-4.0.0=. -fstack-protector-strong -c dmvnorm.f -o dmvnorm.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-Do_dS_/r-base-4.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o
gfortran -fno-optimize-sibling-calls -fpic -g -O2 -fdebug-prefix-map=/build/r-base-Do_dS_/r-base-4.0.0=. -fstack-protector-strong -c mclust.f -o mclust.o
gfortran -fno-optimize-sibling-calls -fpic -g -O2 -fdebug-prefix-map=/build/r-base-Do_dS_/r-base-4.0.0=. -fstack-protector-strong -c mclustaddson.f -o mclustaddson.o
gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o mclust.so dmvnorm.o init.o mclust.o mclustaddson.o -llapack -lblas -lgfortran -lm -lquadmath -lgfortran -lm -lquadmath -L/usr/lib/R/lib -lR
installing to /home/marc/R/x86_64-pc-linux-gnu-library/4.0/00LOCK-mclust/00new/mclust/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
私は一晩中待っていましたが、インストールはまだ同じ時点で止まっています。これを解決する方法を知っている人はいますか？
さまざまなパッケージを問題なくインストールしました。これは、ライブラリ ディレクトリに既にインストールされているパッケージの完全なリストです。
marc@hera:~/R/x86_64-pc-linux-gnu-library/4.0$ ls
askpass DEoptimR generics later pkgbuild readxl tibble
assertthat desc ggplot2 lazyeval pkgconfig rematch tictoc
backports deSolve glue lifecycle pkgload remotes tidyr
base64enc digest gridExtra lspline plotly reprex tidyselect
BH diptest gtable lubridate plyr reshape2 tidyverse
blob dplyr gtools magrittr praise rlang tinytex
broom egg haven markdown prettyunits rmarkdown utf8
callr ellipsis hexbin mime processx robustbase uuid
cellranger evaluate highr modelr progress rprojroot vctrs
cli fansi hms modeltools promises rstudioapi viridisLite
clipr farver htmltools mstate ps rvest webshot
coda.base flexmix htmlwidgets muhaz purrr scales whisker
colorspace flexsurv httr munsell qpdf selectr withr
crayon flextable isoband mvtnorm quadprog spatial xfun
crosstalk forcats jsonlite nlme R6 stringi xml2
curl foreign kableExtra officer RColorBrewer stringr yaml
data.table fs kernlab openssl Rcpp sys zip
DBI gdata knitr pdftools RcppArmadillo systemfonts
dbplyr gdtools labeling pillar readr testthat